mycoreobjectrosdok_disshab_0000002891rosdok_disshab_0000002891rosdokdisshabrosdok_derivate_00002032702023-08-08T10:15:02.154Z2023-01-11T15:16:41.558ZadministratoreditorMSpublished1rosdok_derivate_0000203270truetruederivate_types:fulltextVolltextfulltextwf_edit_epub wf_register_epubstate:publishedstate:publishedveröffentlichtpublishedrosdok/id000041271830837869Oau2023-01-112023-08-05T19:22:00ZrdaConverted from PICA to MODS using Pica2Mods XSLT Transformer 2.7 [SCM: "0c0e7a3c226a4a0cbcbec39b493c3c5257339ab8" "v2.7" "2023-08-04T00:00:00+0200"] with mode 'DEFAULT'.DissertationHochschulschriftDevelopment of genomic resources and tools for precision farming of pikeperch through high-throughput sequencing and computational genomicsThis thesis provides the first genomic tools and resources to enhance pikeperch's innovative farming, optimal domestication, and adaption into modern intensive aquaculture systems, including a high-quality chromosome-level assembly, reference transcriptome, and gene expression atlas. The pikeperch genome was also used as a reference for comparative genomics analyses and population genetics analyses in domesticated individuals to establish the landscape of genetic variations. These findings lay the foundation for addressing critical issues in genomics-informed pikeperch farming.Diese Dissertation stellt die ersten genomischen Werkzeuge und Ressourcen zur Verfügung, um die innovative Zanderzucht, optimale Domestizierung und Anpassung an moderne intensive Aquakultursysteme zu verbessern, einschließlich einer hochwertigen Genom-Assemblierung auf Chromosomenebene, eines Referenztranskriptoms und eines Genexpressionsatlasses. Das Genom des Zanders wurde auch als Referenz für vergleichende Genomanalysen und populationsgenetische Analysen bei domestizierten Individuen verwendet, um die Landschaft der genetischen Variationen zu ermitteln.Julien AlbanNguinkal1987 -VerfasserInaut127780740X0000-0002-1303-4520TomGoldammer1965 -AkademischeR BetreuerIndgs1148624860000-0003-1215-5504Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, GermanyOlafWolkenauerAkademischeR BetreuerIndgsDept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, GermanyStephanSimmAkademischeR BetreuerIndgsInstitute of Bioinformatics University Medicine Greifswald, University of Greifswald, Germany38329-6Universität Rostock1419 -Grad-verleihende Institutiondgg10025954-6Universität RostockAgrar- und Umweltwissenschaftliche Fakultät1998 -Grad-verleihende Institutiondgghttp://purl.uni-rostock.de/rosdok/id00004127urn:nbn:de:gbv:28-rosdok_id00004127-010.18453/rosdok_id00004127004 Informatik570 Biowissenschaften, BiologieAgrar- und Umweltwissenschaftliche Fakultätalle Rechte vorbehaltenNutzungsrechte erteiltLizenz Metadaten: CC0frei zugänglich (Open Access)en2021Universität RostockRostockmonographic202220212023Universitätsbibliothek RostockRostock2023Universitätsbibliothek Rostockhttp://purl.uni-rostock.de/rosdok/id00004127Tom Goldammer (Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, Germany) ; Olaf Wolkenauer (Dept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, Germany) ; Stephan Simm (Institute of Bioinformatics, University Medicine Greifswald University of Greifswald, Germany)[{"affil":"Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, Germany","name":"Goldammer, Tom"},{"affil":"Dept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, Germany","name":"Wolkenauer, Olaf"},{"affil":"Institute of Bioinformatics University Medicine Greifswald, University of Greifswald, Germany","name":"Simm, Stephan"}]vorgelegt von Julien Alban NguinkalDept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, GermanyGoldammer, TomDept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, GermanyWolkenauer, OlafInstitute of Bioinformatics University Medicine Greifswald, University of Greifswald, GermanySimm, Stephandoctype:epubdoctype:epubDokumenttypDocument typedoctype:epub.dissertationdoctype:epub.dissertationDissertationdoctoral thesisdiniPublType:doctoralThesis diniPublType2022:PhDThesis XMetaDissPlusThesisLevel:thesis.doctoralinfo:eu-repo/semantics/doctoralThesisdocumentnatureOfContent:ppn_105825778natureOfContent:ppn_105825778HochschulschriftdiniPublType2022:DoctoralThesisdiniPublType2022:DoctoralThesisDissertation oder HabilitationDoctoral thesisDRIVERdiniPublType2022:PhDThesisdiniPublType2022:PhDThesisDissertationPhD thesisKDSF (Pu34)XMetaDissPlusThesisLevel:thesis.doctoralXMetaDissPlusThesisLevel:thesis.doctoralDoktorarbeitdoctoral thesisSDNB:004SDNB:004004 Informatik004 Data processing Computer sciencesSDNB:570SDNB:570570 Biowissenschaften, Biologie570 Life scienceinstitution:unirostockinstitution:unirostockUniversität RostockUniversity of RostockUniversität RostockUniversität RostockUni.Rostockhttp://d-nb.info/gnd/38329-6institution:unirostock.aufinstitution:unirostock.aufFakultät für Agrar, Bau und UmweltFaculty for Agriculture, Civil and Environmental EngineeringUniversität Rostock. Fakultät für Agrar, Bau und UmweltFakultät für Agrar,<br />Bau und UmweltUni.Rostock.Fakultaet.AUFhttp://d-nb.info/gnd/10025954-6licenseinfo:worklicenseinfo:workWerkworklicenseinfo:work.rightsreservedlicenseinfo:work.rightsreservedalle Rechte vorbehaltenall rights reserved/creativecommons/r/reserved/0.9/88x31.png[DE-28]Urheberrechtsschutz 1.0$gRights Statements$uhttp://rightsstatements.org/vocab/InC/1.0/http://rightsstatements.org/vocab/InC/1.0/http://rightsstatements.org/vocab/InC/1.0/licenseinfo:depositlicenseinfo:depositVeröffentlichungsgenehmigungpermission to storelicenseinfo:deposit.rightsgrantedlicenseinfo:deposit.rightsgrantedNutzungsrechte erteiltrights grantedlicenseinfo:metadatalicenseinfo:metadataLizenzen für Metadatenlicenseinfo:metadata.cc0licenseinfo:metadata.cc0Lizenz Metadaten: CC0license metadata: CC0/creativecommons/p/zero/1.0/88x31.pnghttps://creativecommons.org/publicdomain/zero/1.0/accesscondition:openaccessaccesscondition:openaccessfrei zugänglich (Open Access)open accesshttp://purl.org/coar/access_right/c_abf2OAfreeinfo:eu-repo/semantics/openAccess[DE-28]Open Access$gControlled Vocabulary for Access Rights$uhttp://purl.org/coar/access_right/c_abf2rfc5646:enrfc5646:enEnglischEnglishengengDevelopment of genomic resources and tools for precision farming of pikeperch through high-throughput sequencing and computational genomicsDevelopment of genomic resources and tools for precision farming of pikeperch through high-throughput sequencing and computational genomicsgnd:127780740Xorcid:0000-0002-1303-4520gnd:114862486orcid:0000-0003-1215-5504gnd:38329-6gnd:10025954-6gnd:127780740Xorcid:0000-0002-1303-4520gnd:114862486orcid:0000-0003-1215-5504gnd:38329-6gnd:10025954-6rosdok_disshab_0000002891-d898640e54gnd:127780740Xorcid:0000-0002-1303-4520Julien Alban NguinkalJulien Alban Nguinkalrosdok_disshab_0000002891-d898640e70gnd:114862486orcid:0000-0003-1215-5504Tom GoldammerTom Goldammerrosdok_disshab_0000002891-d898640e87Olaf WolkenauerOlaf Wolkenauerrosdok_disshab_0000002891-d898640e99Stephan SimmStephan Simmrosdok_disshab_0000002891-d898640e110gnd:38329-6Universität RostockUniversität Rostockrosdok_disshab_0000002891-d898640e121gnd:10025954-6Universität Rostock Agrar- und Umweltwissenschaftliche FakultätUniversität Rostock Agrar- und Umweltwissenschaftliche FakultätJulien Alban NguinkalTom GoldammerOlaf WolkenauerStephan SimmUniversität RostockUniversität Rostock Agrar- und Umweltwissenschaftliche FakultätJulien Alban NguinkalTom GoldammerOlaf WolkenauerStephan SimmUniversität RostockUniversität Rostock Agrar- und Umweltwissenschaftliche FakultätJulien Alban NguinkalRostockUniversität Rostockepub.dissertationhttp://purl.uni-rostock.de/rosdok/id00004127urn:nbn:de:gbv:28-rosdok_id00004127-010.18453/rosdok_id00004127This thesis provides the first genomic tools and resources to enhance pikeperch's innovative farming, optimal domestication, and adaption into modern intensive aquaculture systems, including a high-quality chromosome-level assembly, reference transcriptome, and gene expression atlas. The pikeperch genome was also used as a reference for comparative genomics analyses and population genetics analyses in domesticated individuals to establish the landscape of genetic variations. These findings lay the foundation for addressing critical issues in genomics-informed pikeperch farming.Diese Dissertation stellt die ersten genomischen Werkzeuge und Ressourcen zur Verfügung, um die innovative Zanderzucht, optimale Domestizierung und Anpassung an moderne intensive Aquakultursysteme zu verbessern, einschließlich einer hochwertigen Genom-Assemblierung auf Chromosomenebene, eines Referenztranskriptoms und eines Genexpressionsatlasses. Das Genom des Zanders wurde auch als Referenz für vergleichende Genomanalysen und populationsgenetische Analysen bei domestizierten Individuen verwendet, um die Landschaft der genetischen Variationen zu ermitteln.20212021Tom Goldammer (Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, Germany) ; Olaf Wolkenauer (Dept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, Germany) ; Stephan Simm (Institute of Bioinformatics, University Medicine Greifswald University of Greifswald, Germany)[{"affil":"Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, Germany","name":"Goldammer, Tom"},{"affil":"Dept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, Germany","name":"Wolkenauer, Olaf"},{"affil":"Institute of Bioinformatics University Medicine Greifswald, University of Greifswald, Germany","name":"Simm, Stephan"}]vorgelegt von Julien Alban Nguinkalepub.dissertation1 Nguinkal_Dissertation_2023.pdf 19147152 200700811098bac2acdbffabaafb253e rosdok/id000041271830837869Oau2023-01-112023-08-05T19:22:00ZrdaConverted from PICA to MODS using Pica2Mods XSLT Transformer 2.7 [SCM: "0c0e7a3c226a4a0cbcbec39b493c3c5257339ab8" "v2.7" "2023-08-04T00:00:00+0200"] with mode 'DEFAULT'.DissertationHochschulschriftDevelopment of genomic resources and tools for precision farming of pikeperch through high-throughput sequencing and computational genomicsThis thesis provides the first genomic tools and resources to enhance pikeperch's innovative farming, optimal domestication, and adaption into modern intensive aquaculture systems, including a high-quality chromosome-level assembly, reference transcriptome, and gene expression atlas. The pikeperch genome was also used as a reference for comparative genomics analyses and population genetics analyses in domesticated individuals to establish the landscape of genetic variations. These findings lay the foundation for addressing critical issues in genomics-informed pikeperch farming.Diese Dissertation stellt die ersten genomischen Werkzeuge und Ressourcen zur Verfügung, um die innovative Zanderzucht, optimale Domestizierung und Anpassung an moderne intensive Aquakultursysteme zu verbessern, einschließlich einer hochwertigen Genom-Assemblierung auf Chromosomenebene, eines Referenztranskriptoms und eines Genexpressionsatlasses. Das Genom des Zanders wurde auch als Referenz für vergleichende Genomanalysen und populationsgenetische Analysen bei domestizierten Individuen verwendet, um die Landschaft der genetischen Variationen zu ermitteln.Julien AlbanNguinkal1987 -VerfasserInaut127780740X0000-0002-1303-4520TomGoldammer1965 -AkademischeR BetreuerIndgs1148624860000-0003-1215-5504Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, GermanyOlafWolkenauerAkademischeR BetreuerIndgsDept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, GermanyStephanSimmAkademischeR BetreuerIndgsInstitute of Bioinformatics University Medicine Greifswald, University of Greifswald, Germany38329-6Universität Rostock1419 -Grad-verleihende Institutiondgg10025954-6Universität RostockAgrar- und Umweltwissenschaftliche Fakultät1998 -Grad-verleihende Institutiondgghttp://purl.uni-rostock.de/rosdok/id00004127urn:nbn:de:gbv:28-rosdok_id00004127-010.18453/rosdok_id00004127004 Informatik570 Biowissenschaften, BiologieAgrar- und Umweltwissenschaftliche Fakultätalle Rechte vorbehaltenNutzungsrechte erteiltLizenz Metadaten: CC0frei zugänglich (Open Access)en2021Universität RostockRostockmonographic202220212023Universitätsbibliothek RostockRostock2023Universitätsbibliothek Rostockhttp://purl.uni-rostock.de/rosdok/id00004127Tom Goldammer (Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, Germany) ; Olaf Wolkenauer (Dept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, Germany) ; Stephan Simm (Institute of Bioinformatics, University Medicine Greifswald University of Greifswald, Germany)[{"affil":"Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, Germany","name":"Goldammer, Tom"},{"affil":"Dept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, Germany","name":"Wolkenauer, Olaf"},{"affil":"Institute of Bioinformatics University Medicine Greifswald, University of Greifswald, Germany","name":"Simm, Stephan"}]vorgelegt von Julien Alban Nguinkal Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, Germany Goldammer, Tom Dept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, Germany Wolkenauer, Olaf Institute of Bioinformatics University Medicine Greifswald, University of Greifswald, Germany Simm, Stephan 2023-01-11T15:16:41.558Z 2023-08-08T10:15:02.154Z 2023-08-18T10:15:02.159Z {"identifier":"rosdok/id00004127","type":"local_id","additional":"","service":"MCRLocalID","created":"2023-01-11T15:16:41.578Z","registered":"2023-01-11T15:16:41.578Z"} editorMS {"identifier":"urn:nbn:de:gbv:28-rosdok_id00004127-0","type":"dnbUrn","additional":"","service":"RosDokURN","created":"2023-01-11T15:16:41.583Z","registered":"2023-01-11T20:09:59.883Z"} administratorfulltextfile/rosdok_disshab_0000002891/rosdok_derivate_0000203270/Nguinkal_Dissertation_2023.pdfDevelopment of genomic resources and tools for precision farming of pikeperch through high-throughput sequencing and computational genomicsDevelopment of genomic resources and tools for precision farming of pikeperch through high-throughput sequencing and computational genomicsgnd:127780740Xorcid:0000-0002-1303-4520gnd:114862486orcid:0000-0003-1215-5504gnd:38329-6gnd:10025954-6gnd:127780740Xorcid:0000-0002-1303-4520gnd:114862486orcid:0000-0003-1215-5504gnd:38329-6gnd:10025954-6rosdok_disshab_0000002891-d898640e54gnd:127780740Xorcid:0000-0002-1303-4520Julien Alban NguinkalJulien Alban Nguinkalrosdok_disshab_0000002891-d898640e70gnd:114862486orcid:0000-0003-1215-5504Tom GoldammerTom Goldammerrosdok_disshab_0000002891-d898640e87Olaf WolkenauerOlaf Wolkenauerrosdok_disshab_0000002891-d898640e99Stephan SimmStephan Simmrosdok_disshab_0000002891-d898640e110gnd:38329-6Universität RostockUniversität Rostockrosdok_disshab_0000002891-d898640e121gnd:10025954-6Universität Rostock Agrar- und Umweltwissenschaftliche FakultätUniversität Rostock Agrar- und Umweltwissenschaftliche FakultätJulien Alban NguinkalTom GoldammerOlaf WolkenauerStephan SimmUniversität RostockUniversität Rostock Agrar- und Umweltwissenschaftliche FakultätJulien Alban NguinkalTom GoldammerOlaf WolkenauerStephan SimmUniversität RostockUniversität Rostock Agrar- und Umweltwissenschaftliche FakultätJulien Alban NguinkalRostockUniversität Rostockepub.dissertationhttp://purl.uni-rostock.de/rosdok/id00004127urn:nbn:de:gbv:28-rosdok_id00004127-010.18453/rosdok_id00004127This thesis provides the first genomic tools and resources to enhance pikeperch's innovative farming, optimal domestication, and adaption into modern intensive aquaculture systems, including a high-quality chromosome-level assembly, reference transcriptome, and gene expression atlas. The pikeperch genome was also used as a reference for comparative genomics analyses and population genetics analyses in domesticated individuals to establish the landscape of genetic variations. These findings lay the foundation for addressing critical issues in genomics-informed pikeperch farming.Diese Dissertation stellt die ersten genomischen Werkzeuge und Ressourcen zur Verfügung, um die innovative Zanderzucht, optimale Domestizierung und Anpassung an moderne intensive Aquakultursysteme zu verbessern, einschließlich einer hochwertigen Genom-Assemblierung auf Chromosomenebene, eines Referenztranskriptoms und eines Genexpressionsatlasses. Das Genom des Zanders wurde auch als Referenz für vergleichende Genomanalysen und populationsgenetische Analysen bei domestizierten Individuen verwendet, um die Landschaft der genetischen Variationen zu ermitteln.20212021Tom Goldammer (Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, Germany) ; Olaf Wolkenauer (Dept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, Germany) ; Stephan Simm (Institute of Bioinformatics, University Medicine Greifswald University of Greifswald, Germany)[{"affil":"Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, Germany","name":"Goldammer, Tom"},{"affil":"Dept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, Germany","name":"Wolkenauer, Olaf"},{"affil":"Institute of Bioinformatics University Medicine Greifswald, University of Greifswald, Germany","name":"Simm, Stephan"}]vorgelegt von Julien Alban Nguinkal[xslt]Saxonrosdok/id00004127https://purl.uni-rostock.de/rosdok/id00004127183083786910.18453/rosdok_id00004127urn:nbn:de:gbv:28-rosdok_id00004127-0Julien Alban NguinkalNguinkal Julien AlbanDevelopment of genomic resources and tools for precision farming of pikeperch through high-throughput sequencing and computational genomicsDissertationdoctoral thesisUniversität Rostock, 2021This thesis provides the first genomic tools and resources to enhance pikeperch's innovative farming, optimal domestication, and adaption into modern intensive aquaculture systems, including a high-quality chromosome-level assembly, reference transcriptome, and gene expression atlas. The pikeperch…Julien Alban NguinkalDevelopment of genomic resources and tools for precision farming of pikeperch through high-throughput sequencing and computational genomicsUniversitätsbibliothek Rostockhttp://purl.uni-rostock.de/rosdok/id00004127Julien AlbanNguinkal1987 -VerfasserInaut127780740X0000-0002-1303-4520TomGoldammer1965 -AkademischeR BetreuerIndgs1148624860000-0003-1215-5504Dept. of Molecular Biology and Genetics of Fish Faculty of Agricultural and Environmental Sciences, University of Rostock, GermanyOlafWolkenauerAkademischeR BetreuerIndgsDept. of Systems Biology and Bioinformatics Faculty of Computer Science and Electrical Engineering, University of Rostock, GermanyStephanSimmAkademischeR BetreuerIndgsInstitute of Bioinformatics University Medicine Greifswald, University of Greifswald, Germany38329-6Universität Rostock1419 -Grad-verleihende Institutiondgg10025954-6Universität RostockAgrar- und Umweltwissenschaftliche Fakultät1998 -Grad-verleihende Institutiondgg[purl]http://purl.uni-rostock.de/rosdok/id00004127[urn]urn:nbn:de:gbv:28-rosdok_id00004127-0[doi]10.18453/rosdok_id00004127open_access20212021epoch:21th_centuryrfc5646:endoctype:epub.dissertationaccesscondition:openaccessSDNB:004SDNB:570institution:unirostock.aufstate:published