mycoreobjectrosdok_document_0000021686rosdok_document_0000021686rosdokdocumentrosdok_derivate_00002053462023-08-08T13:15:02.384Z2023-03-09T09:41:26.251ZadministratoreditorKLpublished1rosdok_derivate_0000205346truetruederivate_types:fulltextVolltextfulltextwf_edit_epub wf_register_epubstate:publishedstate:publishedveröffentlichtpublishedrosdok/id000042101838727558Oau2023-03-092023-08-05T18:08:11ZrdaConverted from PICA to MODS using Pica2Mods XSLT Transformer 2.7 [SCM: "0c0e7a3c226a4a0cbcbec39b493c3c5257339ab8" "v2.7" "2023-08-04T00:00:00+0200"] with mode 'DEFAULT'.ArtikelPROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-electric SystemsThe reproducibility of scientific results gains increasing attention. In the context of biomedical engineering, this applies to experimental studies of three different kinds: in-vivo, in-vitro, and in-silico. Numerical modelling and finite element simulation of bio-electric systems are intricate processes involving manifold steps. A typical example of this process is the electrical stimulation at alloplastic reconstruction plates of the mandible. During the bio-electric modelling and simulation process, diverse methods realised in various software tools are exploited. To comprehensibly render how the final model has been developed requires a thorough documentation. We exploit the W3C provenance model PROV to structure this process and to make it accessible for modellers and for automatic analyses. Different entity types, such as data, model, software, literature, assumptions, and mathematical equations are distinguished; roles of entities within an activity are revealed as well as the involved researchers. In addition, we identify five process patterns: 1) information extraction from the literature; 2) generation of a geometrical model which uses data as input; 3) composition of several geometrical or mathematical models into a combined model; 4) parameterisation, which augments the input model by additional properties; and, finally, 5) refinement, which uses a model in addition to an assumption and generates an enhanced model. By modelling provenance information of a typical bio-electric modelling and simulation process as well as identifying provenance patterns, we provide a first step towards a better documentation of academic investigations in that scientific field.MaxSchröder1991 -VerfasserInaut11215920820000-0003-1522-494XHendrikjeRabenVerfasserInaut0000-0001-9731-349XFrankKrüger1980 -VerfasserInaut10798759720000-0002-7925-3363AndreasRuscheinskiVerfasserInaut0000-0001-8821-9047UrsulaRienenvan1957 -VerfasserInaut1154207380000-0003-1042-2058AdelindeUhrmacher1961 -VerfasserInaut136258794Sascha MichaelSpors1972 -VerfasserInaut1314847610000-0001-7225-9992http://purl.uni-rostock.de/rosdok/id00004210urn:nbn:de:gbv:28-rosdok_id00004210-310.18453/rosdok_id00004210004 Informatik621.3 Elektrotechnik, ElektronikFakultät für Informatik und Elektrotechnikalle Rechte vorbehaltenNutzungsrechte erteiltLizenz Metadaten: CC0frei zugänglich (Open Access)en1 Online-Ressource (Seiten 3377-3382)2019Universität RostockRostock[Author manuscript version]monographic20192023Universitätsbibliothek RostockRostock2023Universitätsbibliothek Rostockhttp://purl.uni-rostock.de/rosdok/id00004210[{"name":"Raben, Hendrikje","orcid":"0000-0001-9731-349X"},{"name":"Ruscheinski, Andreas","orcid":"0000-0001-8821-9047"}]Max Schröder, Hendrikje Raben, Frank Krüger, Andreas Ruscheinski, Ursula van Rienen, Adelinde Uhrmacher, Sascha Spors41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Berlin, Germany, 20192019IEEE2019pages 3377-3382Sonderdruck aus10.1109/EMBC.2019.8856841Erscheint auch alsVerlags-AusgabeRaben, Hendrikje0000-0001-9731-349XRuscheinski, Andreas0000-0001-8821-9047doctype:epubdoctype:epubDokumenttypDocument typedoctype:epub.articledoctype:epub.articleArtikelarticlediniPublType:article diniPublType2022:Articleinfo:eu-repo/semantics/articledocumentdiniPublType2022:ArticlediniPublType2022:ArticleWissenschaftlicher ArtikelScientific articleKDSF (Pu11)SDNB:004SDNB:004004 Informatik004 Data processing Computer sciencesSDNB:621.3SDNB:621.3621.3 Elektrotechnik, Elektronik621.3 Electrical Engineering, Electronicsinstitution:unirostockinstitution:unirostockUniversität RostockUniversity of RostockUniversität RostockUniversität RostockUni.Rostockhttp://d-nb.info/gnd/38329-6institution:unirostock.iefinstitution:unirostock.iefFakultät für Informatik und ElektrotechnikFaculty of Computer Science and Electrical EngineeringUniversität Rostock. Fakultät für Informatik und ElektrotechnikFakultät für Informatik<br />und ElektrotechnikUni.Rostock.Fakultaet.IEFhttp://d-nb.info/gnd/10085032-7licenseinfo:worklicenseinfo:workWerkworklicenseinfo:work.rightsreservedlicenseinfo:work.rightsreservedalle Rechte vorbehaltenall rights reserved/creativecommons/r/reserved/0.9/88x31.png[DE-28]Urheberrechtsschutz 1.0$gRights Statements$uhttp://rightsstatements.org/vocab/InC/1.0/http://rightsstatements.org/vocab/InC/1.0/http://rightsstatements.org/vocab/InC/1.0/licenseinfo:depositlicenseinfo:depositVeröffentlichungsgenehmigungpermission to storelicenseinfo:deposit.rightsgrantedlicenseinfo:deposit.rightsgrantedNutzungsrechte erteiltrights grantedlicenseinfo:metadatalicenseinfo:metadataLizenzen für Metadatenlicenseinfo:metadata.cc0licenseinfo:metadata.cc0Lizenz Metadaten: CC0license metadata: CC0/creativecommons/p/zero/1.0/88x31.pnghttps://creativecommons.org/publicdomain/zero/1.0/accesscondition:openaccessaccesscondition:openaccessfrei zugänglich (Open Access)open accesshttp://purl.org/coar/access_right/c_abf2OAfreeinfo:eu-repo/semantics/openAccess[DE-28]Open Access$gControlled Vocabulary for Access Rights$uhttp://purl.org/coar/access_right/c_abf2rfc5646:enrfc5646:enEnglischEnglishengengPROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-electric SystemsPROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-electric Systemsgnd:1121592082orcid:0000-0003-1522-494Xorcid:0000-0001-9731-349Xgnd:1079875972orcid:0000-0002-7925-3363orcid:0000-0001-8821-9047gnd:115420738orcid:0000-0003-1042-2058gnd:136258794gnd:131484761orcid:0000-0001-7225-9992gnd:1121592082orcid:0000-0003-1522-494Xorcid:0000-0001-9731-349Xgnd:1079875972orcid:0000-0002-7925-3363orcid:0000-0001-8821-9047gnd:115420738orcid:0000-0003-1042-2058gnd:136258794gnd:131484761orcid:0000-0001-7225-9992rosdok_document_0000021686-d160455e48gnd:1121592082orcid:0000-0003-1522-494XMax SchröderMax Schröderrosdok_document_0000021686-d160455e65orcid:0000-0001-9731-349XHendrikje RabenHendrikje Rabenrosdok_document_0000021686-d160455e77gnd:1079875972orcid:0000-0002-7925-3363Frank KrügerFrank Krügerrosdok_document_0000021686-d160455e93orcid:0000-0001-8821-9047Andreas RuscheinskiAndreas Ruscheinskirosdok_document_0000021686-d160455e105gnd:115420738orcid:0000-0003-1042-2058Ursula Rienen vanUrsula Rienen vanrosdok_document_0000021686-d160455e123gnd:136258794Adelinde UhrmacherAdelinde Uhrmacherrosdok_document_0000021686-d160455e138gnd:131484761orcid:0000-0001-7225-9992Sascha Michael SporsSascha Michael SporsMax SchröderHendrikje RabenFrank KrügerAndreas RuscheinskiUrsula Rienen vanAdelinde UhrmacherSascha Michael SporsMax SchröderHendrikje RabenFrank KrügerAndreas RuscheinskiUrsula Rienen vanAdelinde UhrmacherSascha Michael SporsMax SchröderHendrikje RabenFrank KrügerAndreas RuscheinskiUrsula Rienen vanAdelinde UhrmacherSascha Michael SporsRostockUniversität Rostockepub.articlehttp://purl.uni-rostock.de/rosdok/id00004210urn:nbn:de:gbv:28-rosdok_id00004210-310.18453/rosdok_id00004210The reproducibility of scientific results gains increasing attention. In the context of biomedical engineering, this applies to experimental studies of three different kinds: in-vivo, in-vitro, and in-silico. Numerical modelling and finite element simulation of bio-electric systems are intricate processes involving manifold steps. A typical example of this process is the electrical stimulation at alloplastic reconstruction plates of the mandible. During the bio-electric modelling and simulation process, diverse methods realised in various software tools are exploited. To comprehensibly render how the final model has been developed requires a thorough documentation. We exploit the W3C provenance model PROV to structure this process and to make it accessible for modellers and for automatic analyses. Different entity types, such as data, model, software, literature, assumptions, and mathematical equations are distinguished; roles of entities within an activity are revealed as well as the involved researchers. In addition, we identify five process patterns: 1) information extraction from the literature; 2) generation of a geometrical model which uses data as input; 3) composition of several geometrical or mathematical models into a combined model; 4) parameterisation, which augments the input model by additional properties; and, finally, 5) refinement, which uses a model in addition to an assumption and generates an enhanced model. By modelling provenance information of a typical bio-electric modelling and simulation process as well as identifying provenance patterns, we provide a first step towards a better documentation of academic investigations in that scientific field.20192019[Author manuscript version]41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Berlin, Germany, 20192019201941st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Berlin, Germany, 20192019IEEE2019pages 3377-3382Sonderdruck aus10.1109/EMBC.2019.8856841Erscheint auch alsVerlags-Ausgabe10.1109/EMBC.2019.8856841[{"name":"Raben, Hendrikje","orcid":"0000-0001-9731-349X"},{"name":"Ruscheinski, Andreas","orcid":"0000-0001-8821-9047"}]Max Schröder, Hendrikje Raben, Frank Krüger, Andreas Ruscheinski, Ursula van Rienen, Adelinde Uhrmacher, Sascha Sporsepub.article1 Schroeder_PROVenancePatterns_2019.pdf 1245068 0cc1fe5c54a257a0d832d53de496029e rosdok/id000042101838727558Oau2023-03-092023-08-05T18:08:11ZrdaConverted from PICA to MODS using Pica2Mods XSLT Transformer 2.7 [SCM: "0c0e7a3c226a4a0cbcbec39b493c3c5257339ab8" "v2.7" "2023-08-04T00:00:00+0200"] with mode 'DEFAULT'.ArtikelPROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-electric SystemsThe reproducibility of scientific results gains increasing attention. In the context of biomedical engineering, this applies to experimental studies of three different kinds: in-vivo, in-vitro, and in-silico. Numerical modelling and finite element simulation of bio-electric systems are intricate processes involving manifold steps. A typical example of this process is the electrical stimulation at alloplastic reconstruction plates of the mandible. During the bio-electric modelling and simulation process, diverse methods realised in various software tools are exploited. To comprehensibly render how the final model has been developed requires a thorough documentation. We exploit the W3C provenance model PROV to structure this process and to make it accessible for modellers and for automatic analyses. Different entity types, such as data, model, software, literature, assumptions, and mathematical equations are distinguished; roles of entities within an activity are revealed as well as the involved researchers. In addition, we identify five process patterns: 1) information extraction from the literature; 2) generation of a geometrical model which uses data as input; 3) composition of several geometrical or mathematical models into a combined model; 4) parameterisation, which augments the input model by additional properties; and, finally, 5) refinement, which uses a model in addition to an assumption and generates an enhanced model. By modelling provenance information of a typical bio-electric modelling and simulation process as well as identifying provenance patterns, we provide a first step towards a better documentation of academic investigations in that scientific field.MaxSchröder1991 -VerfasserInaut11215920820000-0003-1522-494XHendrikjeRabenVerfasserInaut0000-0001-9731-349XFrankKrüger1980 -VerfasserInaut10798759720000-0002-7925-3363AndreasRuscheinskiVerfasserInaut0000-0001-8821-9047UrsulaRienenvan1957 -VerfasserInaut1154207380000-0003-1042-2058AdelindeUhrmacher1961 -VerfasserInaut136258794Sascha MichaelSpors1972 -VerfasserInaut1314847610000-0001-7225-9992http://purl.uni-rostock.de/rosdok/id00004210urn:nbn:de:gbv:28-rosdok_id00004210-310.18453/rosdok_id00004210004 Informatik621.3 Elektrotechnik, ElektronikFakultät für Informatik und Elektrotechnikalle Rechte vorbehaltenNutzungsrechte erteiltLizenz Metadaten: CC0frei zugänglich (Open Access)en1 Online-Ressource (Seiten 3377-3382)2019Universität RostockRostock[Author manuscript version]monographic20192023Universitätsbibliothek RostockRostock2023Universitätsbibliothek Rostockhttp://purl.uni-rostock.de/rosdok/id00004210[{"name":"Raben, Hendrikje","orcid":"0000-0001-9731-349X"},{"name":"Ruscheinski, Andreas","orcid":"0000-0001-8821-9047"}]Max Schröder, Hendrikje Raben, Frank Krüger, Andreas Ruscheinski, Ursula van Rienen, Adelinde Uhrmacher, Sascha Spors41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Berlin, Germany, 20192019IEEE2019pages 3377-3382Sonderdruck aus10.1109/EMBC.2019.8856841Erscheint auch alsVerlags-Ausgabe Raben, Hendrikje 0000-0001-9731-349X Ruscheinski, Andreas 0000-0001-8821-9047 2023-03-09T09:41:26.251Z 2023-08-08T13:15:02.384Z 2023-08-18T13:15:02.388Z {"identifier":"rosdok/id00004210","type":"local_id","additional":"","service":"MCRLocalID","created":"2023-03-09T09:41:26.260Z","registered":"2023-03-09T09:41:26.260Z"} editorKL {"identifier":"urn:nbn:de:gbv:28-rosdok_id00004210-3","type":"dnbUrn","additional":"","service":"RosDokURN","created":"2023-03-09T09:41:26.264Z","registered":"2023-03-10T09:55:10.787Z"} administrator {"identifier":"http://purl.uni-rostock.de/rosdok/id00004210","type":"purl","additional":"","service":"RosDokPURL","created":"2023-08-08T13:15:02.392Z","registered":"2023-08-08T13:15:02.391Z"} {"identifier":"10.18453/rosdok_id00004210","type":"doi","additional":"","service":"RosDokDOI","created":"2023-08-08T13:15:02.394Z","registered":"2023-08-08T13:15:02.394Z"}fulltextfile/rosdok_document_0000021686/rosdok_derivate_0000205346/Schroeder_PROVenancePatterns_2019.pdfPROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-electric SystemsPROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-electric Systemsgnd:1121592082orcid:0000-0003-1522-494Xorcid:0000-0001-9731-349Xgnd:1079875972orcid:0000-0002-7925-3363orcid:0000-0001-8821-9047gnd:115420738orcid:0000-0003-1042-2058gnd:136258794gnd:131484761orcid:0000-0001-7225-9992gnd:1121592082orcid:0000-0003-1522-494Xorcid:0000-0001-9731-349Xgnd:1079875972orcid:0000-0002-7925-3363orcid:0000-0001-8821-9047gnd:115420738orcid:0000-0003-1042-2058gnd:136258794gnd:131484761orcid:0000-0001-7225-9992rosdok_document_0000021686-d160455e48gnd:1121592082orcid:0000-0003-1522-494XMax SchröderMax Schröderrosdok_document_0000021686-d160455e65orcid:0000-0001-9731-349XHendrikje RabenHendrikje Rabenrosdok_document_0000021686-d160455e77gnd:1079875972orcid:0000-0002-7925-3363Frank KrügerFrank Krügerrosdok_document_0000021686-d160455e93orcid:0000-0001-8821-9047Andreas RuscheinskiAndreas Ruscheinskirosdok_document_0000021686-d160455e105gnd:115420738orcid:0000-0003-1042-2058Ursula Rienen vanUrsula Rienen vanrosdok_document_0000021686-d160455e123gnd:136258794Adelinde UhrmacherAdelinde Uhrmacherrosdok_document_0000021686-d160455e138gnd:131484761orcid:0000-0001-7225-9992Sascha Michael SporsSascha Michael SporsMax SchröderHendrikje RabenFrank KrügerAndreas RuscheinskiUrsula Rienen vanAdelinde UhrmacherSascha Michael SporsMax SchröderHendrikje RabenFrank KrügerAndreas RuscheinskiUrsula Rienen vanAdelinde UhrmacherSascha Michael SporsMax SchröderHendrikje RabenFrank KrügerAndreas RuscheinskiUrsula Rienen vanAdelinde UhrmacherSascha Michael SporsRostockUniversität Rostockepub.articlehttp://purl.uni-rostock.de/rosdok/id00004210urn:nbn:de:gbv:28-rosdok_id00004210-310.18453/rosdok_id00004210The reproducibility of scientific results gains increasing attention. In the context of biomedical engineering, this applies to experimental studies of three different kinds: in-vivo, in-vitro, and in-silico. Numerical modelling and finite element simulation of bio-electric systems are intricate processes involving manifold steps. A typical example of this process is the electrical stimulation at alloplastic reconstruction plates of the mandible. During the bio-electric modelling and simulation process, diverse methods realised in various software tools are exploited. To comprehensibly render how the final model has been developed requires a thorough documentation. We exploit the W3C provenance model PROV to structure this process and to make it accessible for modellers and for automatic analyses. Different entity types, such as data, model, software, literature, assumptions, and mathematical equations are distinguished; roles of entities within an activity are revealed as well as the involved researchers. In addition, we identify five process patterns: 1) information extraction from the literature; 2) generation of a geometrical model which uses data as input; 3) composition of several geometrical or mathematical models into a combined model; 4) parameterisation, which augments the input model by additional properties; and, finally, 5) refinement, which uses a model in addition to an assumption and generates an enhanced model. By modelling provenance information of a typical bio-electric modelling and simulation process as well as identifying provenance patterns, we provide a first step towards a better documentation of academic investigations in that scientific field.20192019[Author manuscript version]41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Berlin, Germany, 20192019201941st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Berlin, Germany, 20192019IEEE2019pages 3377-3382Sonderdruck aus10.1109/EMBC.2019.8856841Erscheint auch alsVerlags-Ausgabe10.1109/EMBC.2019.8856841[{"name":"Raben, Hendrikje","orcid":"0000-0001-9731-349X"},{"name":"Ruscheinski, Andreas","orcid":"0000-0001-8821-9047"}]Max Schröder, Hendrikje Raben, Frank Krüger, Andreas Ruscheinski, Ursula van Rienen, Adelinde Uhrmacher, Sascha Spors[xslt]Saxonrosdok/id00004210https://purl.uni-rostock.de/rosdok/id00004210183872755810.18453/rosdok_id00004210urn:nbn:de:gbv:28-rosdok_id00004210-3Max Schröder, Hendrikje Raben, Frank Krüger, Andreas Ruscheinski, Ursula Rienen van, Adelinde Uhrmacher, Sascha Michael SporsSchröder Max, Raben Hendrikje, Krüger Frank, Ruscheinski Andreas, Rienen Ursula van, Uhrmacher Adelinde, Spors Sascha MichaelPROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-electric SystemsArtikelarticle[Author manuscript version], Universität Rostock, 2019The reproducibility of scientific results gains increasing attention. In the context of biomedical engineering, this applies to experimental studies of three different kinds: in-vivo, in-vitro, and in-silico. Numerical modelling and finite element simulation of bio-electric systems are intricate…Max SchröderHendrikje RabenFrank KrügerAndreas Ruscheinskivan Ursula RienenAdelinde UhrmacherSascha Michael SporsPROVenance Patterns in Numerical Modelling and Finite Element Simulation Processes of Bio-electric Systems41st Annual International Conference of the IEEE Engineering in Medicine and Biology Society (EMBC), Berlin, Germany, 2019Universitätsbibliothek Rostockhttp://purl.uni-rostock.de/rosdok/id00004210MaxSchröder1991 -VerfasserInaut11215920820000-0003-1522-494XHendrikjeRabenVerfasserInaut0000-0001-9731-349XFrankKrüger1980 -VerfasserInaut10798759720000-0002-7925-3363AndreasRuscheinskiVerfasserInaut0000-0001-8821-9047UrsulaRienenvan1957 -VerfasserInaut1154207380000-0003-1042-2058AdelindeUhrmacher1961 -VerfasserInaut136258794Sascha MichaelSpors1972 -VerfasserInaut1314847610000-0001-7225-9992[purl]http://purl.uni-rostock.de/rosdok/id00004210[urn]urn:nbn:de:gbv:28-rosdok_id00004210-3[doi]10.18453/rosdok_id00004210open_access20192019epoch:21th_centuryrfc5646:endoctype:epub.articleaccesscondition:openaccessSDNB:004SDNB:621.3institution:unirostock.iefstate:published